📈 Data Science Papers

Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method

Kenneth J. Livak, Thomas D. Schmittgen (2001)

Methods

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I Love, Wolfgang Huber et al. (2014)

Genome Biology

Efficiency of ab-initio total energy calculations for metals and semiconductors using a plane-wave basis set

G. Kresse, J. Furthmüller (1996)

Computational Materials Science

Electric Field Effect in Atomically Thin Carbon Films

K. S. Novoselov, A. K. Geim et al. (2004)

Science

The Measurement of Observer Agreement for Categorical Data

J. Richard Landis, Gary G. Koch (1977)

Biometrics

VMD: Visual molecular dynamics

William Humphrey, Andrew Dalke et al. (1996)

Journal of Molecular Graphics

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony M. Bolger, Marc Lohse et al. (2014)

Bioinformatics

The Sequence Alignment/Map format and SAMtools

Heng Li, Bob Handsaker et al. (2009)

Bioinformatics

U-Net: Convolutional Networks for Biomedical Image Segmentation

Olaf Ronneberger, Philipp Fischer et al. (2015)

Lecture Notes in Computer Science

Research electronic data capture (REDCap)—A metadata-driven methodology and workflow process for providing translational research informatics support

Paul A. Harris, Robert Taylor et al. (2009)

Journal of Biomedical Informatics

Density Estimation for Statistics and Data Analysis

B.W. Silverman (2018)

XGBoost

Tianqi Chen, Carlos Guestrin (2016)

Proceedings of the 22nd ACM SIGKDD International Conference on Knowledge Discovery and Data Mining

edgeR : a Bioconductor package for differential expression analysis of digital gene expression data

Mark D. Robinson, Davis J. McCarthy et al. (2009)

Bioinformatics

The Protein Data Bank

H. M. Berman (2000)

Nucleic Acids Research

Matplotlib: A 2D Graphics Environment

John D. Hunter (2007)

Computing in Science & Engineering